Tutorials 5 and 6 recording
Unfortunately, there is a problem with tutorial 5 video (screen recording stopped).
Attached here is last year's tutorial and some good videos on YouTube (there are plenty more):
* Please note that the code changed from last year
|עדכון אחרון ב- 5/12/2022, 17:40:39 Last updated on 5/12/2022, 17:40:39 Последняя модификация 5/12/2022, 17:40:39 تمت الحتلنة الأخيرة ب- 5/12/2022, 17:40:39|
Computational & Cancer Genomics Conference
I mentioned in class this upcoming conference: https://ccg2022.net.technion.ac.il/
There is a registration fee of 300 NIS (that includes lunch), but we will allow students to join the sessions freely (without lunch).
|פורסם ב- 30/11/2022, 15:17:54 Created on 30/11/2022, 15:17:54 Создано 30/11/2022, 15:17:54 تم النشر ب- 30/11/2022, 15:17:54|
HW2 is published
HW2 has been published, and it is due on December 12.
|עדכון אחרון ב- 28/11/2022, 22:15:01 Last updated on 28/11/2022, 22:15:01 Последняя модификация 28/11/2022, 22:15:01 تمت الحتلنة الأخيرة ب- 28/11/2022, 22:15:01|
Tutorial 4 recording
Attached here is a recording of tutorial 4:
|פורסם ב- 21/11/2022, 13:29:25 Created on 21/11/2022, 13:29:25 Создано 21/11/2022, 13:29:25 تم النشر ب- 21/11/2022, 13:29:25|
Apologize for the tutorial 4 cancelation
I got confused with today's tutorial hours.
Apologize for not being there on time.
I highly recommend coming to Monday's tutorial.
In addition, I will schedule a meeting in Zoom for those who can't be there and share the recording.
Please send me an e-mail if you are interested.
|פורסם ב- 17/11/2022, 14:48:13 Created on 17/11/2022, 14:48:13 Создано 17/11/2022, 14:48:13 تم النشر ب- 17/11/2022, 14:48:13|
HW1 is published
HW1 has been published, and it is due on November 28.
|פורסם ב- 14/11/2022, 21:28:15 Created on 14/11/2022, 21:28:15 Создано 14/11/2022, 21:28:15 تم النشر ب- 14/11/2022, 21:28:15|
Tutorial 3 requirements
In our next tutorial, we will practice sequence alignment in R.
Therefore, I highly recommend bringing laptops.
To save time, please download "tutorial_3.zip" from the course website and open the file "tutorial3_packages.Rmd".
You will need to install the Bioconductor package manager in order to install some of the packages that are required for the class exercise.
In addition, the first homework assignment will be released on Monday.
My apologies for any confusion caused.
|פורסם ב- 9/11/2022, 14:47:55 Created on 9/11/2022, 14:47:55 Создано 9/11/2022, 14:47:55 تم النشر ب- 9/11/2022, 14:47:55|
1. There will be no zoom or recordings this year.
2. The mid-term exam will be during the Wednesday class of December 28th, 2022.
As explained, you do not need to learn for this exam, it will be questions about what we learned.
Have a great semester!
|פורסם ב- 26/10/2022, 13:29:17 Created on 26/10/2022, 13:29:17 Создано 26/10/2022, 13:29:17 تم النشر ب- 26/10/2022, 13:29:17|
Requirements for the tutorials and some recommendations
In our upcoming tutorials, you will analyze different types of biological data and for this purpose, we will use R.
R is a popular programming language among, statisticians, data scientists and bioinformaticians.
Do the following before our first tutorial:
1. Install R and Rstudio (a user-friendly IDE for R) by following the instructions below:
2. Packages installation: R packages are similar to libraries in Python.
Please take a few minutes to understand the concept of packages as described at: https://rstudio-education.github.io/hopr/packages2.html
For our first lessons, you’ll need to install the tidyverse package collection, which includes many of the packages you’re likely to use in data analyses (such as ggplot2, dplyr, stringr etc.).
Install all the packages in the tidyverse by running - install.packages("tidyverse") command in the Rstudio console window.
You can read about different packages here: https://www.tidyverse.org/packages/
1. In our first tutorial we will get familiar with R and Rstudio, however, this is just a drop in the ocean. I encourage you to learn the basic syntax of R before our first tutorial.
There are endless introduction videos for R on youtube - I am sure you will find the one that is best for you.
2. Bring your laptop for the tutorials. you don't have to, but it is recommended since I will give you some tasks to try and write code by yourself during the tutorial.
3. Please fill up the questionnaire, and spare a few minutes to tell us about yourself.
It helps us make the course and the tutorial better.
Feel free to e-mail if you need any help -
|עדכון אחרון ב- 25/10/2022, 21:54:11 Last updated on 25/10/2022, 21:54:11 Последняя модификация 25/10/2022, 21:54:11 تمت الحتلنة الأخيرة ب- 25/10/2022, 21:54:11|
24/10 Monday's tutorial
Please notice that there will be NO tutorial this Monday (24/10).
Our first tutorial will be on Thursday (27/10).
Every tutorial on Mondays will be identical to the previous one on Thursdays.
|פורסם ב- 18/10/2022, 12:32:48 Created on 18/10/2022, 12:32:48 Создано 18/10/2022, 12:32:48 تم النشر ب- 18/10/2022, 12:32:48|
We want to get to know you
|It's only a week until the start of the semester, and we are excited to get to know you.|
Please fill out the following questionnaire: https://forms.gle/o97XUEMwC51NmfKX9
It will help us understand who you are, what is your background, and what you hope to
gain from this course.
|פורסם ב- 18/10/2022, 08:59:39 Created on 18/10/2022, 08:59:39 Создано 18/10/2022, 08:59:39 تم النشر ب- 18/10/2022, 08:59:39|