.. (לתיקייה המכילה) | ||
Part 2 Q4 - FIMO doesn't run / Gives error messages | |
- An error message while loading the matrix file may occur and can be ignored. - If the sequence file fails to load try downloading it from the website directly (right click -> save link as) instead of copying its content. |
Important update regarding part 2 Q4b - analyzing the p value distributions | |
1. Before the analysis of the p value distribution, filter the result tables to contain only rows with p value below 0.1. You can filter in R or in the input file. Use the filtered tables for the remaining sections |
Part 2 Q3 - How should I name the matrix file? | |
Submit the file as “HW3_Q3_matrix.txt”. |
Part 2 Q4c - What structure should we use, MFE or centroid? | |
MFE. As we saw in class, the centroid structure is not necessarily one that exists in nature and so it might be misleading to use it to get to structural conclusion about the binding of the RBP and the RNA molecule. |