.. (לתיקייה המכילה) | ||
In question 2, do I know the scoring function? | |
No, you need to write a general algorithm which works with any given scoring function (you may mark it using sigma, as we did in class). |
In question 2, can you shed light on what is considered trivial aligment? | |
When an index(!) in the sequence was aligned to itself it is considered trivial. |
In question 4a, do we need to show all the global alignment tables calculated during the star algorithm? | |
Yes |
In question 4, What is the cost of (-,-)? | |
cost(-,-) = 0 |
In question 4b, in case I show an example ,do I need to exalain how I have found this multiple alignment? | |
No, just show your multiple alignment, calculate its score and compare it to the score found using the "star" algorithm. |